BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005D04SP1|AL425364
(845 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1287 641 0.0
>3x_Contig1287
Length = 6942
Score = 641 bits (312), Expect = 0.0
Identities = 350/364 (96%), Gaps = 2/364 (0%)
Strand = Plus / Plus
Query: 484 cagcagcggcaacaaatcctctaccttgcagaaractactgaygagawatatcttgactt 543
||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||
Sbjct: 4657 cagcagcggcaacaaatcctctaccttgcagaaaactactgaagagaaatatcttgactt 4716
Query: 544 gacttatgatagabatttggatagatataccagggaaatcgaacttgacatggatgasgt 603
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4717 gactaatgatagaaatttggatagatataccagggaaatcgaacttgacatggatgaagt 4776
Query: 604 tcggtcatttttbtcataccctaatgggagttcatatgggttggccgcaccatgccctgt 663
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4777 tcggtcatttttatcataccctaatggaagttcatatgggttggccgcaccatgccctgt 4836
Query: 664 caacgtgattgccaaccgggattattctagtgcagawagtagatttgactactggaaatc 723
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4837 caacgtgattgccaaccgggattattctagtgcagaaagtagatttgactactggaaatc 4896
Query: 724 cattaaacagggaactattcctcagtwcgawacagaagccaaagctagaaggaatgacat 783
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 4897 cattaaacagggaactattcctcagtacgaaacagaagccaaagctagaaggaatgacat 4956
Query: 784 ggagaaatgtgttacgtttgttaagargg-agcg-agagagccgcccgttatgttcaatt 841
|||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct: 4957 ggagaaatgtgttacgtttgttaagaaggaagcgaagagagccgcccgttatgttcaatt 5016
Query: 842 atct 845
||||
Sbjct: 5017 atct 5020
Score = 129 bits (63), Expect = 6e-30
Identities = 124/146 (84%), Gaps = 2/146 (1%)
Strand = Plus / Plus
Query: 87 ctttctttttttcwtgtcagctttctgatcaatttcttgccstttt--cttcccactcac 144
||||| || |||| ||| |||||||||||||||||||||| |||| |||||||||||
Sbjct: 4266 ctttcattatttcatgtaagctttctgatcaatttcttgcagttttttcttcccactcaa 4325
Query: 145 gtaattctcgtgctgtggtgttctcttccactatttcgmtattggtgttttgctggtttt 204
|||| | || || ||| ||| ||||| |||||||| | |||||||||||||||| | ||
Sbjct: 4326 gtaaaacacgagcagtgatgtactcttacactatttagatattggtgttttgctgatatt 4385
Query: 205 ggtttttttgtcactttacatcawag 230
||||||||||||||||||||||| ||
Sbjct: 4386 ggtttttttgtcactttacatcaaag 4411
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.42 0.718 1.35
Gapped
Lambda K H
1.42 0.718 1.35
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3336
Number of Sequences: 1807
Number of extensions: 3336
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 845
length of database: 10,358,551
effective HSP length: 16
effective length of query: 829
effective length of database: 10,329,639
effective search space: 8563270731
effective search space used: 8563270731
T: 0
A: 40
X1: 5 (10.3 bits)
X2: 14 (28.8 bits)
S1: 11 (23.1 bits)
S2: 49 (101.2 bits)